PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_10A3AF467.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 722aa    MW: 84084.7 Da    PI: 8.7456
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_10A3AF467.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.84.9e-2531121290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 
                             Yn+YA+  GFsvr + +++ k ++e++ r+f+Cskeg+r e+  + t+++r++ra tr+gCka+l+++ +  +g+w v+k++  HnH
  Traes_2DL_10A3AF467.1  31 HYNRYARAKGFSVRLDDKEYVKGTREVKARRFCCSKEGHRLEKYFQaTDQKREPRALTRCGCKAMLEIQHDAgRGQWFVKKFVDVHNH 118
                            6***************************************999877689999********************9*************** PP

                   FAR1  88 ela 90 
                            +la
  Traes_2DL_10A3AF467.1 119 PLA 121
                            *96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-2231121IPR004330FAR1 DNA binding domain
PfamPF105511.9E-33243337IPR018289MULE transposase domain
PROSITE profilePS509669.495524563IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MDGHSVSLEE IEEYHMMVSQ MFASENQGYE HYNRYARAKG FSVRLDDKEY VKGTREVKAR  60
RFCCSKEGHR LEKYFQATDQ KREPRALTRC GCKAMLEIQH DAGRGQWFVK KFVDVHNHPL  120
ADPDQSAFLR SHRRMNDAHK ADAVEYGLGG LRTFQIMNVA EKQHGGYPHV GYISRDLYNF  180
FARYKKKRIL GRDADFVLNH MRVQEERDAE FFFKYTTDDE GHLRNLFWAD SQSQIDYEAF  240
GDVVVFDSTY RVSRYNLPFV AFVGLNHHRS TVVFGIGVVS DETHKSYEWL LQTFVEAMGH  300
KEPISVITDG DSAMRKAIRK ILPRTDHRLC SWHIEQNMIR HLRNPMLDDF RKLIYCRMGV  360
YQFEKSWAEF KVNYEIEEEN EWMSRMYKLR KKWAAAYTKG RYFLGMQSNQ RSESLNSRLH  420
NHLDRKMSLV DVVEHTEHCI SRMRRNEAEL DAICSQSVPF TRIDACLLEI NVARIYTPKN  480
FKMVRDCIRR SCAWVIQEQT TVNDLVRYEV VLKDGAEGGS RRLFSVECSF DGSLMNGAFC  540
PCRKMECEAI PCAHIFAVLV FVRAATIPPC CVSKRWTMEA KAAFVSVRNA NTHVWSEEMS  600
RYRELRNIAS IALFKVSKSG ERSQEVKDYL QSIIDGPIEN DDNTEETTFG PIPSHYTAAS  660
HASADRVLDP KIVDTKGAPC KKRMKPFHET LRETNGRKKR TRRCGQCKSS EHDRRRCPDL  720
GK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1680699KKRMKPFHETLRETNGRKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233182.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5BRA70.0W5BRA7_WHEAT; Uncharacterized protein
STRINGBRADI2G21270.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-93FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]